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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G240700.1 | ||||||||
Common Name | B456_007G240700, LOC105804243 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39510 Da PI: 7.2186 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.3e-20 | 149 | 199 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae Aa a+++a+ kl+ge Gorai.007G240700.1 149 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEAAALAYDKAAYKLRGE 199 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.50E-23 | 148 | 208 | No hit | No description |
PROSITE profile | PS51032 | 23.261 | 149 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 149 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-23 | 149 | 207 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 149 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 150 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 150 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 172 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAAAIDMYNS SSNSSVFSDP FSAELMKALE PFMKSASSTS PLSSSSSYSQ SNLYPEFCSP 60 WRNHLCSEQR FCNYQNLMGF EQTGSIGLNQ LTPSQILQIQ AQVYQQQQQQ QVASRPTTAS 120 LKNQRFNFLS PKAVPMKHAS STPSKPTKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD 180 TAEAAALAYD KAAYKLRGEF ARLNFPHLKH QGAHISGEFG DYKPLHSAVD AKLQAICQSL 240 QKQENSRKAC SVHDSKPKVE FDYPVKREEF DQSPRFASPK VEMNSLSSSS SSSSSPSPDL 300 SDESLAGSSS PESDITFFDF SDSKWDDNEI FGLEKYPSVE IDWEAIRELS ES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-21 | 148 | 206 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ848094 | 0.0 | GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds. | |||
GenBank | KP780203 | 0.0 | KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492204.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | A0A0D2QYD8 | 0.0 | A0A0D2QYD8_G | ||||
STRING | POPTR_0005s07900.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 4e-64 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G240700.1 |
Entrez Gene | 105804243 |
Publications ? help Back to Top | |||
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