PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G240700.1
Common NameB456_007G240700, LOC105804243
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 353aa    MW: 39510 Da    PI: 7.2186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G240700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-20149199256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae Aa a+++a+ kl+ge
  Gorai.007G240700.1 149 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEAAALAYDKAAYKLRGE 199
                         59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-23148208No hitNo description
PROSITE profilePS5103223.261149206IPR001471AP2/ERF domain
SMARTSM003801.2E-37149212IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-23149207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-32149207IPR001471AP2/ERF domain
PRINTSPR003671.0E-10150161IPR001471AP2/ERF domain
PfamPF008471.3E-13150199IPR001471AP2/ERF domain
PRINTSPR003671.0E-10172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAAAIDMYNS SSNSSVFSDP FSAELMKALE PFMKSASSTS PLSSSSSYSQ SNLYPEFCSP  60
WRNHLCSEQR FCNYQNLMGF EQTGSIGLNQ LTPSQILQIQ AQVYQQQQQQ QVASRPTTAS  120
LKNQRFNFLS PKAVPMKHAS STPSKPTKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD  180
TAEAAALAYD KAAYKLRGEF ARLNFPHLKH QGAHISGEFG DYKPLHSAVD AKLQAICQSL  240
QKQENSRKAC SVHDSKPKVE FDYPVKREEF DQSPRFASPK VEMNSLSSSS SSSSSPSPDL  300
SDESLAGSSS PESDITFFDF SDSKWDDNEI FGLEKYPSVE IDWEAIRELS ES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21148206160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8480940.0GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds.
GenBankKP7802030.0KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492204.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
TrEMBLA0A0D2QYD80.0A0A0D2QYD8_G
STRINGPOPTR_0005s07900.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-64ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]